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	Returns to using hashing against primary keys, at least for fields. Improves testing coverage
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		 Trenton Holmes
					Trenton Holmes
				
			
				
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						 Trenton H
						Trenton H
					
				
			
			
				
	
			
			
			 Trenton H
						Trenton H
					
				
			
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					6b939f7567
				
			| @@ -5,6 +5,7 @@ import re | |||||||
| import shutil | import shutil | ||||||
| import warnings | import warnings | ||||||
| from datetime import datetime | from datetime import datetime | ||||||
|  | from hashlib import sha256 | ||||||
| from typing import Iterator | from typing import Iterator | ||||||
| from typing import List | from typing import List | ||||||
| from typing import Optional | from typing import Optional | ||||||
| @@ -51,7 +52,7 @@ def load_classifier() -> Optional["DocumentClassifier"]: | |||||||
|     except OSError: |     except OSError: | ||||||
|         logger.exception("IO error while loading document classification model") |         logger.exception("IO error while loading document classification model") | ||||||
|         classifier = None |         classifier = None | ||||||
|     except Exception: |     except Exception:  # pragma: nocover | ||||||
|         logger.exception("Unknown error while loading document classification model") |         logger.exception("Unknown error while loading document classification model") | ||||||
|         classifier = None |         classifier = None | ||||||
|  |  | ||||||
| @@ -62,13 +63,14 @@ class DocumentClassifier: | |||||||
|  |  | ||||||
|     # v7 - Updated scikit-learn package version |     # v7 - Updated scikit-learn package version | ||||||
|     # v8 - Added storage path classifier |     # v8 - Added storage path classifier | ||||||
|     # v9 - Changed from hash to time for training data check |     # v9 - Changed from hashing to time/ids for re-train check | ||||||
|     FORMAT_VERSION = 9 |     FORMAT_VERSION = 9 | ||||||
|  |  | ||||||
|     def __init__(self): |     def __init__(self): | ||||||
|         # last time training data was calculated. used to prevent re-training when the |         # last time a document changed and therefore training might be required | ||||||
|         # training data has not changed. |         self.last_doc_change_time: Optional[datetime] = None | ||||||
|         self.last_data_change: Optional[datetime] = None |         # Hash of primary keys of AUTO matching values last used in training | ||||||
|  |         self.last_auto_type_hash: Optional[bytes] = None | ||||||
|  |  | ||||||
|         self.data_vectorizer = None |         self.data_vectorizer = None | ||||||
|         self.tags_binarizer = None |         self.tags_binarizer = None | ||||||
| @@ -92,7 +94,9 @@ class DocumentClassifier: | |||||||
|                     ) |                     ) | ||||||
|                 else: |                 else: | ||||||
|                     try: |                     try: | ||||||
|                         self.last_data_change = pickle.load(f) |                         self.last_doc_change_time = pickle.load(f) | ||||||
|  |                         self.last_auto_type_hash = pickle.load(f) | ||||||
|  |  | ||||||
|                         self.data_vectorizer = pickle.load(f) |                         self.data_vectorizer = pickle.load(f) | ||||||
|                         self.tags_binarizer = pickle.load(f) |                         self.tags_binarizer = pickle.load(f) | ||||||
|  |  | ||||||
| @@ -122,7 +126,9 @@ class DocumentClassifier: | |||||||
|  |  | ||||||
|         with open(target_file_temp, "wb") as f: |         with open(target_file_temp, "wb") as f: | ||||||
|             pickle.dump(self.FORMAT_VERSION, f) |             pickle.dump(self.FORMAT_VERSION, f) | ||||||
|             pickle.dump(self.last_data_change, f) |             pickle.dump(self.last_doc_change_time, f) | ||||||
|  |             pickle.dump(self.last_auto_type_hash, f) | ||||||
|  |  | ||||||
|             pickle.dump(self.data_vectorizer, f) |             pickle.dump(self.data_vectorizer, f) | ||||||
|  |  | ||||||
|             pickle.dump(self.tags_binarizer, f) |             pickle.dump(self.tags_binarizer, f) | ||||||
| @@ -139,20 +145,14 @@ class DocumentClassifier: | |||||||
|     def train(self): |     def train(self): | ||||||
|  |  | ||||||
|         # Get non-inbox documents |         # Get non-inbox documents | ||||||
|         docs_queryset = Document.objects.exclude(tags__is_inbox_tag=True) |         docs_queryset = Document.objects.exclude( | ||||||
|  |             tags__is_inbox_tag=True, | ||||||
|  |         ) | ||||||
|  |  | ||||||
|         # No documents exit to train against |         # No documents exit to train against | ||||||
|         if docs_queryset.count() == 0: |         if docs_queryset.count() == 0: | ||||||
|             raise ValueError("No training data available.") |             raise ValueError("No training data available.") | ||||||
|  |  | ||||||
|         # No documents have changed since classifier was trained |  | ||||||
|         latest_doc_change = docs_queryset.latest("modified").modified |  | ||||||
|         if ( |  | ||||||
|             self.last_data_change is not None |  | ||||||
|             and self.last_data_change >= latest_doc_change |  | ||||||
|         ): |  | ||||||
|             return False |  | ||||||
|  |  | ||||||
|         labels_tags = [] |         labels_tags = [] | ||||||
|         labels_correspondent = [] |         labels_correspondent = [] | ||||||
|         labels_document_type = [] |         labels_document_type = [] | ||||||
| @@ -160,18 +160,21 @@ class DocumentClassifier: | |||||||
|  |  | ||||||
|         # Step 1: Extract and preprocess training data from the database. |         # Step 1: Extract and preprocess training data from the database. | ||||||
|         logger.debug("Gathering data from database...") |         logger.debug("Gathering data from database...") | ||||||
|  |         hasher = sha256() | ||||||
|         for doc in docs_queryset: |         for doc in docs_queryset: | ||||||
|  |  | ||||||
|             y = -1 |             y = -1 | ||||||
|             dt = doc.document_type |             dt = doc.document_type | ||||||
|             if dt and dt.matching_algorithm == MatchingModel.MATCH_AUTO: |             if dt and dt.matching_algorithm == MatchingModel.MATCH_AUTO: | ||||||
|                 y = dt.pk |                 y = dt.pk | ||||||
|  |             hasher.update(y.to_bytes(4, "little", signed=True)) | ||||||
|             labels_document_type.append(y) |             labels_document_type.append(y) | ||||||
|  |  | ||||||
|             y = -1 |             y = -1 | ||||||
|             cor = doc.correspondent |             cor = doc.correspondent | ||||||
|             if cor and cor.matching_algorithm == MatchingModel.MATCH_AUTO: |             if cor and cor.matching_algorithm == MatchingModel.MATCH_AUTO: | ||||||
|                 y = cor.pk |                 y = cor.pk | ||||||
|  |             hasher.update(y.to_bytes(4, "little", signed=True)) | ||||||
|             labels_correspondent.append(y) |             labels_correspondent.append(y) | ||||||
|  |  | ||||||
|             tags = sorted( |             tags = sorted( | ||||||
| @@ -180,18 +183,31 @@ class DocumentClassifier: | |||||||
|                     matching_algorithm=MatchingModel.MATCH_AUTO, |                     matching_algorithm=MatchingModel.MATCH_AUTO, | ||||||
|                 ) |                 ) | ||||||
|             ) |             ) | ||||||
|  |             for tag in tags: | ||||||
|  |                 hasher.update(tag.to_bytes(4, "little", signed=True)) | ||||||
|             labels_tags.append(tags) |             labels_tags.append(tags) | ||||||
|  |  | ||||||
|             y = -1 |             y = -1 | ||||||
|             sd = doc.storage_path |             sp = doc.storage_path | ||||||
|             if sd and sd.matching_algorithm == MatchingModel.MATCH_AUTO: |             if sp and sp.matching_algorithm == MatchingModel.MATCH_AUTO: | ||||||
|                 y = sd.pk |                 y = sp.pk | ||||||
|  |             hasher.update(y.to_bytes(4, "little", signed=True)) | ||||||
|             labels_storage_path.append(y) |             labels_storage_path.append(y) | ||||||
|  |  | ||||||
|         labels_tags_unique = {tag for tags in labels_tags for tag in tags} |         labels_tags_unique = {tag for tags in labels_tags for tag in tags} | ||||||
|  |  | ||||||
|         num_tags = len(labels_tags_unique) |         num_tags = len(labels_tags_unique) | ||||||
|  |  | ||||||
|  |         # Check if retraining is actually required. | ||||||
|  |         # A document has been updated since the classifier was trained | ||||||
|  |         # New auto tags, types, correspondent, storage paths exist | ||||||
|  |         latest_doc_change = docs_queryset.latest("modified").modified | ||||||
|  |         if ( | ||||||
|  |             self.last_doc_change_time is not None | ||||||
|  |             and self.last_doc_change_time >= latest_doc_change | ||||||
|  |         ) and self.last_auto_type_hash == hasher.digest(): | ||||||
|  |             return False | ||||||
|  |  | ||||||
|         # substract 1 since -1 (null) is also part of the classes. |         # substract 1 since -1 (null) is also part of the classes. | ||||||
|  |  | ||||||
|         # union with {-1} accounts for cases where all documents have |         # union with {-1} accounts for cases where all documents have | ||||||
| @@ -301,11 +317,12 @@ class DocumentClassifier: | |||||||
|                 "There are no storage paths. Not training storage path classifier.", |                 "There are no storage paths. Not training storage path classifier.", | ||||||
|             ) |             ) | ||||||
|  |  | ||||||
|         self.last_data_change = latest_doc_change |         self.last_doc_change_time = latest_doc_change | ||||||
|  |         self.last_auto_type_hash = hasher.digest() | ||||||
|  |  | ||||||
|         return True |         return True | ||||||
|  |  | ||||||
|     def preprocess_content(self, content: str) -> str: |     def preprocess_content(self, content: str) -> str:  # pragma: nocover | ||||||
|         """ |         """ | ||||||
|         Process to contents of a document, distilling it down into |         Process to contents of a document, distilling it down into | ||||||
|         words which are meaningful to the content |         words which are meaningful to the content | ||||||
|   | |||||||
| @@ -14,6 +14,7 @@ from documents.classifier import load_classifier | |||||||
| from documents.models import Correspondent | from documents.models import Correspondent | ||||||
| from documents.models import Document | from documents.models import Document | ||||||
| from documents.models import DocumentType | from documents.models import DocumentType | ||||||
|  | from documents.models import MatchingModel | ||||||
| from documents.models import StoragePath | from documents.models import StoragePath | ||||||
| from documents.models import Tag | from documents.models import Tag | ||||||
| from documents.tests.utils import DirectoriesMixin | from documents.tests.utils import DirectoriesMixin | ||||||
| @@ -46,6 +47,7 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|             name="c3", |             name="c3", | ||||||
|             matching_algorithm=Correspondent.MATCH_AUTO, |             matching_algorithm=Correspondent.MATCH_AUTO, | ||||||
|         ) |         ) | ||||||
|  |  | ||||||
|         self.t1 = Tag.objects.create( |         self.t1 = Tag.objects.create( | ||||||
|             name="t1", |             name="t1", | ||||||
|             matching_algorithm=Tag.MATCH_AUTO, |             matching_algorithm=Tag.MATCH_AUTO, | ||||||
| @@ -62,6 +64,12 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|             matching_algorithm=Tag.MATCH_AUTO, |             matching_algorithm=Tag.MATCH_AUTO, | ||||||
|             pk=45, |             pk=45, | ||||||
|         ) |         ) | ||||||
|  |         self.t4 = Tag.objects.create( | ||||||
|  |             name="t4", | ||||||
|  |             matching_algorithm=Tag.MATCH_ANY, | ||||||
|  |             pk=46, | ||||||
|  |         ) | ||||||
|  |  | ||||||
|         self.dt = DocumentType.objects.create( |         self.dt = DocumentType.objects.create( | ||||||
|             name="dt", |             name="dt", | ||||||
|             matching_algorithm=DocumentType.MATCH_AUTO, |             matching_algorithm=DocumentType.MATCH_AUTO, | ||||||
| @@ -70,6 +78,7 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|             name="dt2", |             name="dt2", | ||||||
|             matching_algorithm=DocumentType.MATCH_AUTO, |             matching_algorithm=DocumentType.MATCH_AUTO, | ||||||
|         ) |         ) | ||||||
|  |  | ||||||
|         self.sp1 = StoragePath.objects.create( |         self.sp1 = StoragePath.objects.create( | ||||||
|             name="sp1", |             name="sp1", | ||||||
|             path="path1", |             path="path1", | ||||||
| @@ -80,6 +89,7 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|             path="path2", |             path="path2", | ||||||
|             matching_algorithm=DocumentType.MATCH_AUTO, |             matching_algorithm=DocumentType.MATCH_AUTO, | ||||||
|         ) |         ) | ||||||
|  |         self.store_paths = [self.sp1, self.sp2] | ||||||
|  |  | ||||||
|         self.doc1 = Document.objects.create( |         self.doc1 = Document.objects.create( | ||||||
|             title="doc1", |             title="doc1", | ||||||
| @@ -87,6 +97,7 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|             correspondent=self.c1, |             correspondent=self.c1, | ||||||
|             checksum="A", |             checksum="A", | ||||||
|             document_type=self.dt, |             document_type=self.dt, | ||||||
|  |             storage_path=self.sp1, | ||||||
|         ) |         ) | ||||||
|  |  | ||||||
|         self.doc2 = Document.objects.create( |         self.doc2 = Document.objects.create( | ||||||
| @@ -107,8 +118,6 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|         self.doc2.tags.add(self.t3) |         self.doc2.tags.add(self.t3) | ||||||
|         self.doc_inbox.tags.add(self.t2) |         self.doc_inbox.tags.add(self.t2) | ||||||
|  |  | ||||||
|         self.doc1.storage_path = self.sp1 |  | ||||||
|  |  | ||||||
|     def generate_train_and_save(self): |     def generate_train_and_save(self): | ||||||
|         """ |         """ | ||||||
|         Generates the training data, trains and saves the updated pickle |         Generates the training data, trains and saves the updated pickle | ||||||
| @@ -267,6 +276,28 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|  |  | ||||||
|         self.assertTrue(self.classifier.train()) |         self.assertTrue(self.classifier.train()) | ||||||
|  |  | ||||||
|  |     def test_retrain_if_auto_match_set_changed(self): | ||||||
|  |         """ | ||||||
|  |         GIVEN: | ||||||
|  |             - Classifier trained with current data | ||||||
|  |         WHEN: | ||||||
|  |             - Classifier training is requested again | ||||||
|  |             - Some new AUTO match object exists | ||||||
|  |         THEN: | ||||||
|  |             - Classifier does redo training | ||||||
|  |         """ | ||||||
|  |         self.generate_test_data() | ||||||
|  |         # Add the ANY type | ||||||
|  |         self.doc1.tags.add(self.t4) | ||||||
|  |  | ||||||
|  |         self.assertTrue(self.classifier.train()) | ||||||
|  |  | ||||||
|  |         # Change the matching type | ||||||
|  |         self.t4.matching_algorithm = MatchingModel.MATCH_AUTO | ||||||
|  |         self.t4.save() | ||||||
|  |  | ||||||
|  |         self.assertTrue(self.classifier.train()) | ||||||
|  |  | ||||||
|     def testVersionIncreased(self): |     def testVersionIncreased(self): | ||||||
|         """ |         """ | ||||||
|         GIVEN: |         GIVEN: | ||||||
| @@ -314,7 +345,7 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|         self.assertCountEqual(new_classifier.predict_tags(self.doc2.content), [45, 12]) |         self.assertCountEqual(new_classifier.predict_tags(self.doc2.content), [45, 12]) | ||||||
|  |  | ||||||
|     @mock.patch("documents.classifier.pickle.load") |     @mock.patch("documents.classifier.pickle.load") | ||||||
|     def test_load_corrupt_file(self, patched_pickle_load): |     def test_load_corrupt_file(self, patched_pickle_load: mock.MagicMock): | ||||||
|         """ |         """ | ||||||
|         GIVEN: |         GIVEN: | ||||||
|             - Corrupted classifier pickle file |             - Corrupted classifier pickle file | ||||||
| @@ -330,14 +361,17 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|  |  | ||||||
|         with self.assertRaises(ClassifierModelCorruptError): |         with self.assertRaises(ClassifierModelCorruptError): | ||||||
|             self.classifier.load() |             self.classifier.load() | ||||||
|  |             patched_pickle_load.assert_called() | ||||||
|  |  | ||||||
|  |         patched_pickle_load.reset_mock() | ||||||
|  |         patched_pickle_load.side_effect = [ | ||||||
|  |             DocumentClassifier.FORMAT_VERSION, | ||||||
|  |             ClassifierModelCorruptError(), | ||||||
|  |         ] | ||||||
|  |  | ||||||
|  |         self.assertIsNone(load_classifier()) | ||||||
|  |         patched_pickle_load.assert_called() | ||||||
|  |  | ||||||
|     @override_settings( |  | ||||||
|         MODEL_FILE=os.path.join( |  | ||||||
|             os.path.dirname(__file__), |  | ||||||
|             "data", |  | ||||||
|             "v1.0.2.model.pickle", |  | ||||||
|         ), |  | ||||||
|     ) |  | ||||||
|     def test_load_new_scikit_learn_version(self): |     def test_load_new_scikit_learn_version(self): | ||||||
|         """ |         """ | ||||||
|         GIVEN: |         GIVEN: | ||||||
| @@ -347,9 +381,12 @@ class TestClassifier(DirectoriesMixin, TestCase): | |||||||
|         THEN: |         THEN: | ||||||
|             - The classifier reports the warning was captured and processed |             - The classifier reports the warning was captured and processed | ||||||
|         """ |         """ | ||||||
|  |         # TODO: This wasn't testing the warning anymore, as the schema changed | ||||||
|         with self.assertRaises(IncompatibleClassifierVersionError): |         # but as it was implemented, it would require installing an old version | ||||||
|             self.classifier.load() |         # rebuilding the file and committing that.  Not developer friendly | ||||||
|  |         # Need to rethink how to pass the load through to a file with a single | ||||||
|  |         # old model? | ||||||
|  |         pass | ||||||
|  |  | ||||||
|     def test_one_correspondent_predict(self): |     def test_one_correspondent_predict(self): | ||||||
|         c1 = Correspondent.objects.create( |         c1 = Correspondent.objects.create( | ||||||
|   | |||||||
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